Hi Ed:
I finally got some time free (later) this evening.
After reviewing your info and other links, there may be several different factors involved in your troubleshooting scenario.
I do
not recommend re-installing ADE20 and/or MSFS at this stage of inquiry into your current troubleshooting scenario.
First, I recommend you
back up your entire ADE installation folder chain, and ADE project / output package folder chains.
Those folders may still contain work products you have invested a lot of time into, so you need to keep that content safe(-er).
Also, it is file content in those above folders that may require analysis for troubleshooting your reported issues.
I also suggest you
make (1) backup of MSFS' Packages entire folder chain (both Official
and Community sub-folder chains).
Yes, that may require significant storage space; but IMHO, time and stress is more costly than storage space nowadays.
The above folders should also be kept as an investment in saving time with re-installs when that becomes necessary.
The reason I suggest doing that, is I can recover in
minutes from a need to reinstall MSFS 2020 ...using some trickery.
AFAIK, the MS-Store (and Steam ?) installation process reads "hash" info in the initial compressed source files to validate them.
I have not yet seen a MS-Store MSFS re-install question- or reject- one of the files in a restored Official sub-folder chain.
When there is an update available for any of the existing files in a restored Official sub-folder chain, it simply is replaced.
However, I use MS-Store version, and not Steam; most Steam users seem to prefer allowing apps to simply reinstall themselves.
It is also possible that Steam is so Draconian that it just requires having total authority to do scorched Earth re-installs; YMMV.
So, my most important takeaway is to keep Official sub-folder backups so that you may recover quicker after troubleshooting.
In some cases solutions are simple, such as Builds, Cleans, JSON Edits, emptying Community folder and restarting MSFS etc.
In other cases, one may need to reinstall MSFS or even MS-Store (I had to do that 3 times, then re-install MSFS each time too).
That is why I developed my "quick reinstall protocol", which works 'acceptably' with re-installs of at least MS-Store version.
MS-Store inventories / verifies / 'accepts' all Official sub-folder chain MSFS files after restored during a 'paused' re-install.
Basically, after the first ~1 GB download is done, and the reinstall is started, pause it, to restore Official sub-folder chain MSFS files.
Then one resumes re-installing MSFS, which proceeds very fast, typically completing in minutes, as only a few files download.
I am pleased to say that I have not had a need for such troubleshooting in over a year with an updated MSFS 2020 & SDK.
But perhaps it is more practical to try a few basic things initially before attempting the more drastic options of re-installation.
It is possible that my Win-10 install of MSFS 2020 and ADE 20 are (thus far) free of issues which your installs may now have.
So I suggest you first consider allowing me to see if your projects from ADE20 and MSFS 2020 folder chain will load / work OK.
Make ZIP copies of folder chains described above, upload them to DropBox, GoogleDrive, MediaFire etc., and PM me links.
By folder chains described above, I mean
only your ADE20 installation, ADE project folders, and MSFS project folders.
Specifically I would
not need to see your MSFS' Packages folder chain, that has both Official and Community sub-folder chains
I can test if projects load in DevMode GUI, see if missing project components reappear, and test if adding polygons works OK.
I will then notify you promptly of the status of those test results.
I can also check the ADE install and project sub-folders, and the MSFS project sub-folders to see if your missing files still exist.
Alternatively, of course, you could first try doing all that yourself, assuming ADE and DevMode GUI allow you to do so.
Be aware that complex ADE projects may take a few minutes to be handed off to the DevMode GUI compiler via FSPackageTool.
Also, in some cases, the MSFS package compiler console window may not appear until it is launched via DevMode GUI menu.
I will check back to see what you decided to proceed with first, and would be glad to be of any help I can.
GaryGB