PS. My plans file with the error described above (West Coast 1959) now loaded fine and produced 14 flight plans, compared to 17 using the MRAI compiler (and it had multiple errors I had to fix, yours has none). Very good! I did have to fix the time zone for Ontario, OR, though. The 5 minute wait times are working fine. The only "errors" are that there are 6 plans with more than 100 legs, which I will have to fix manually (I usually split them in two at a small town I never go to, or create a fake airport where the plane can go to "RON" the remainder of the week). That's a common problem with these local service airlines. My helicopter airline plans are even worse - they often have over 200 legs...
So it looks like you now have a compiler better than MRAI - congratulations. However, I did a comparison of putting 90 minutes into the FN Priority box and leaving it blank. The resulting flight plan files are identical, so it isn't actually doing anything. But it's not doing any harm either, as you say. In this FP, some of the multi stop flights are broken up between 2 or 3 planes, so it appears that our attempt didn't work.
But I have been doing more thinking about this problem, and (especially for schedules like this one with short 5 minute stops) when you think about it, AIFP will almost always choose the next leg of a multi stop flight, because it will be rare that a different flight leaves within 5 minutes of the first plane's arrival.
What is causing AIFP (and MRAI Compiler) to break up long multi stop flights is this:
A flight arrives at a town, let's say KPDT (Pendleton, OR). This is the end of a flight, so there is no flight within 90 minutes with the same number. So now AIFP looks for the next available flight. Turns out we'll say it's flight 55 in our example. So now the plane starts flying flight 55, and flies the rest of the legs, into Spokane. But flight 55 actually started in Idaho Falls, and just stops in Pendleton for 5 minutes. Since the legs from Pendleton to Spokane have already been taken, AIFP now assigns the Idaho Falls to Pendleton legs to another aircraft.
So it looks like my dream of keeping these flights together will never be realized. But I'm glad I was able to help make this a great flight plan compiler. I'll let you know of any further problems, or any other improvements I can think of.
I do have one VERY minor thing - when you type in the airline name in the upper left box of the "load plans file and convert to flight plans" box, when I press Tab I would love the focus to go to the Parking Code, the other thing I have to type in.
Thanks again for a great job,